These are nice motherboards, but cpu coolers are a bit problematic due to the sm backplate on the cpu. The sm coolers work great, but cost about $60 (for the 4U cooler). Noctua says their cooler is incompatable with the sm cpu backplate. The Thermaltake TOUGHAIR 310 has a thinner cooler backplate and *may* work, but I haven't tested it.
There's actually a decent number of options....
Pretty much any cooler with 3mm mounting screws that go into a backplate will work with the Supermicro backplate as installed. Just leave the backplate that comes with the cooler off and use the one on the motherboard.
Since you mention Thermaltake and Noctua, I assume you're not necessarily looking for 1U server heatsinks or anything? Silverstone, CoolerMaster, and others have coolers with 3mm mounting that works. There's liquid ones as well. The LGA115x mounting rings on Asetek style coolers that I've owned (Asetek branded as well as Corsair, EVGA, etc.) had 3mm mounts as well.
There's even tutorials out there on swapping out Noctua mounting for 3mm screws that will work. The tutorials I found were to mount Noctua coolers on a Dell, but the motherboard hole pattern for LGA1150 is standardized as is the CPU/Socket stack height, so if it will work with a 3mm hole Dell backplate, it should work with the Supermicro backplate as well.
You can even get cheap pushpin to screw refit kits on Ebay to replace the push pins on Intel stock coolers. As with other similar solutions, make sure the kit has 3mm screws that go down into a backplate, then set aside the backplate that comes with the kit in favor of the one installed on the motherboard.
Myself, I've usually used the SM 1U heatsinks that
@itronin mentions above. Heatsink by itself for 1U applications. 2U and more height I use the 1U heatsink along with a 92mm fan on top mounted with a 3D printed snap on bracket.
Cheers!