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The motherboard should fit, the X11SDV-4C-TLN2F is listed as one of the supported boards here: SCE300 | 1U | Chassis | Products | Super Micro Computer, Inc. However you won't be able to use your A6x25, the 1U design is only tall enough for the heatsink by itself. The chassis uses front to back...

I know this is quite an old thread but I made some simple clips for mounting an 80mm Noctua in a 2U case, hope it helps someone. https://www.thingiverse.com/thing:4625156