I'm only using EPYC 7402s on Windows 10 Pro 1909, but haven't had any trouble boot with SMT on, though I'm running considerably fewer threads than you are.
There's another thread where user Layla was struggling to get Windows Server 2019 to boot and eventually succeeded by turning IOMMU on in...
I just built a system with the H11DSi and the Noctua NH-U14S TR4-SP3 coolers you referenced. They were tight, but fit fine with the exception of a bit of clearance issues on the P2-DIMME1 RAM slot, which necessitated mounting the fan a bit higher than I liked (the fan casing sticks a bit above...
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