There are further pages that explain that it's ambient operating temperature, but it's 1200+ page datasheet, so who wants to go through that. Broadcom is fine too and you should be fine with that over Intel. I haven't looked through their datasheets, but operating conditions should be similar.
Supermicro lists the maximum supported size. In fact, the photo they have on the chassis page has it pictured with an mATX motherboard. Cooling is also a non-issue given it's a 65W CPU.
Just don't be disappointed when desktop workloads perform worse than consumer CPUs (no Core or Ryzen CPU has that many PCIe lanes available): https://www.asrockrack.com/general/productdetail.asp?Model=SIENAD8UD3
A few exceptions aside, if you have 6 pin PCIe power connectors on the motherboard, that's to supply additional power to the motherboard, not to run a cable from it to a GPU. If you have many high power devices (which can draw 75W from the slot), plus a demanding GPU, it's possible to exceed...
You won't need to swap heatsinks for a 2U chassis. It will work just fine with the existing one (mine were run in a Supermicro 2U chassis). Should you go down that route though, the heatsink is removable looking at one of my personal boards, though it's not standard (there really is no such...
ASRock D1541D4U-2T8R? Has a modest, but low power CPU, supports RDIMMs, dual 10GbE, and integrated LSI SAS3 HBA. Still have a couple PCIe slots to work with too.
If you really don't have space for another switch, you don't have to use the dedicated IPMI ports. You can share with the primary NIC and just set a different VLAN for it in the UEFI settings.
Used this in the past, but I'm sure there are numerous alternatives, some of which may be free: Disk Recovery Software and Hard Drive Recovery tool for Windows, Mac, and Linux
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